About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66770912_66771502_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
66770912 - 66771502

Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGGTTTTG

5'SS Class:
major

3'SS Sequence:
TTTGACCATTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
TTCCCTTTGACC

Flanking Amino Acid:
GVNMGILQKEERDCSAVSGV

Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.2
0.52
1.1
67.7
40.1

Major BPS
100
1.24
0.5
100
0

Major PPT
74.6
0.55
1
71.1
39.7

Minor 5ss
37
-1.5
3.2
48.8
47.4

Minor BPS
70.7
0.63
1.2
75.07
35.7

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

66763386 - 66772497
9112

66763386 - 66772606
9221