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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66772204_66772459_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66772204 - 66772459
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TGTATCAGAATA
Flanking Amino Acid:
TITSTQQEVKKTRYLLEENQ
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
48.5
-0.1
1.7
62.75
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007278
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007556
66763386 - 66772606
9221