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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66774877_66777492_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66774877 - 66777492
Intron Length:
2616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGACT
5'SS Class:
major
3'SS Sequence:
TATTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTACCATAACT
Flanking Amino Acid:
GSLTALTTDNWLNEGEAYYL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69
41.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
81.7
35.3
Minor 5ss
34
-1.8
3.4
46.3
44
Minor BPS
66.1
0.58
1.7
81.73
38.8

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041497
66774623 - 66785889
11267