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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66778792_66781011_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66778792 - 66781011
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAATC
Flanking Amino Acid:
QEYRLPLSKTDFTTKKWHGS
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.4
0.55
0.8
67
34.4
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
54.5
0.12
1.5
64
35.6

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041497
66774623 - 66785889
11267
ENSAPLT00000007416
66774623 - 66820566
45944