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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66787992_66793544_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
66787992 - 66793544
Intron Length:
5553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTAGACTTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
EMDKLPAIIFMKIFYRLRFE
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
50.1
0
1.7
59.1
46.2
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944