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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66794808_66794907_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66794808 - 66794907
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
AAACTCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGTTTAAAC
Flanking Amino Acid:
HPCAALTVNHIENYGIPADL
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
80.1
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.9
0.45
1
59.2
41.8
Minor 5ss
45.4
-0.5
2.9
62.3
42.4
Minor BPS
66.3
0.49
1.8
79.33
36

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944