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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66795018_66795190_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66795018 - 66795190
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATCATGACA
Flanking Amino Acid:
EPKKTYRVRLVLYGERYNDL
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
83.1
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.1
0.81
0.8
80.7
31.3
Minor 5ss
40.9
-1
2.7
53.5
43.9
Minor BPS
55.2
0.16
1.7
68.83
36.8

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944