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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66795337_66795874_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
66795337 - 66795874
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTACGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGAACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCTTGAACT
Flanking Amino Acid:
ATISNPEHLTEWLQSVKRYW
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
54.5
45.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.4
0.46
0.9
63.9
37
Minor 5ss
47.7
-0.2
3
60.3
45.5
Minor BPS
77.8
0.95
1.3
90.35
32.9

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944