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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66796766_66799144_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66796766 - 66799144
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATTTGAAAA
Flanking Amino Acid:
DYRNDVMNSQILVTVPQCLE
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
56.4
0.2
1.5
69.96
35.8

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944