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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66799265_66800261_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66799265 - 66800261
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTACTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTGCTTTACTT
Flanking Amino Acid:
GVVVYVAPTKALVNQVVGTV
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.1
0.43
1.1
72.7
36.6
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
59
0.36
1.7
74.65
43.4

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944