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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66811543_66812045_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66811543 - 66812045
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTATA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTGTTTTAACA
Flanking Amino Acid:
TKQVLPIMKMQQLCVHFVLK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
77.6
31.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.3
0.68
0.9
76.7
36.2
Minor 5ss
40.1
-1.1
2.7
47.2
43.7
Minor BPS
69.5
0.61
1.3
73.92
38.7

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944