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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66815414_66816282_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66815414 - 66816282
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTAACTGAATA
Flanking Amino Acid:
GARYIVVFFKDAEQMYFRYP
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.3
0.64
0.9
72.4
37.6
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
55
0.15
1.7
67.42
38.4

Associated Gene:

Gene:
DDX60
Ensembl Gene ID:
ENSAPLG00000007120
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007416
66774623 - 66820566
45944