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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66843698_66881911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66843698 - 66881911
Intron Length:
38214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAC
U12 Branch Point Sequence:
CTCCCCTTACAC
Flanking Amino Acid:
RVAGNPVPDVSPHLFHALQA
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
60
0.25
1
66.9
29.8
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
51.3
0.02
1.8
60.76
44.3

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018880
66837781 - 66883128
45348