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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66843698_66901192_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66843698 - 66901192
Intron Length:
57495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTCTAAAT
Flanking Amino Acid:
RVAGNPVPDVSWFFEGKELQ
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.4
0.62
1
73.6
41.8
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
63.9
0.51
1.7
85.47
34.3

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189
ENSAPLT00000032022
66842666 - 67030854
188189
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704