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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66903756_66904376_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66903756 - 66904376
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GTTGTCTGATGT
Flanking Amino Acid:
VFKSKSGAMPQAQKKTTSVS
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
45.1
-0.2
2
64.8
45.6

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032022
66842666 - 67030854
188189
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189