About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66904483_66905354_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66904483 - 66905354
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
CATTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATTCTTTGCATT
Flanking Amino Acid:
IQPISVPSQQVQSPTSYLHR
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
46.8
-0.1
1.8
67.89
37.4

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189
ENSAPLT00000032022
66842666 - 67030854
188189