About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_66916045_66917537_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
66916045 - 66917537

Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTTGTGAC

5'SS Class:
major

3'SS Sequence:
TGATTTCTTTTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAT

U12 Branch Point Sequence:
TTCTTTTTGATT

Flanking Amino Acid:
TSSAQLTVCSANSESSSHEL

Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.4
0.6
1.2
69.6
34.9

Major BPS
96.4
1.15
0.6
85.7
34.9

Major PPT
79.7
0.67
0.8
78
36.2

Minor 5ss
35.4
-1.7
3
43.7
44.1

Minor BPS
70.3
0.72
1.1
81.54
34.7

Associated Gene:

Gene:
PALLD

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

66842666 - 67030854
188189

66842666 - 67030854
188189

66842666 - 67030381
187716

66842666 - 67029369
186704