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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67010036_67010606_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67010036 - 67010606
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGCAT
5'SS Class:
major
3'SS Sequence:
TCTGTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTGTCCTTACAG
Flanking Amino Acid:
QEPEEEPTIQEARSVDASVV
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
58.6
41.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83
0.74
0.8
76.4
32.4
Minor 5ss
26
-2.8
3.4
38.3
46.7
Minor BPS
55.2
0.02
1.9
60.18
47.4

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000032022
66842666 - 67030854
188189