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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67012381_67017906_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67012381 - 67017906
Intron Length:
5526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTCTTCTCAGCC
Flanking Amino Acid:
CKVAGNPKPKIYWFKDGKQI
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
85.7
0.8
0.7
81.5
23.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.9
-0
1.8
61.77
43.9

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189
ENSAPLT00000032022
66842666 - 67030854
188189