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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67026717_67027433_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67026717 - 67027433
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
TTTATTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CGATTTTTATTT
Flanking Amino Acid:
NTFSLELVVAAKEVHKAPVF
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.8
80.3
31.7
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
51.8
0.14
1.6
64.37
40.9

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032022
66842666 - 67030854
188189
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189