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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67027600_67029080_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67027600 - 67029080
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATTTTCTACTT
Flanking Amino Acid:
ESLTHSTDRVSMHQDNYGYI
Intron Amino Acid Position:
1309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.6
0.76
0.8
84.5
30.4
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
47.9
-0
1.8
67.36
37.9

Associated Gene:

Gene:
PALLD
Ensembl Gene ID:
ENSAPLG00000006750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007034
66842666 - 67030381
187716
ENSAPLT00000036365
66842666 - 67030854
188189
ENSAPLT00000032022
66842666 - 67030854
188189
ENSAPLT00000029349
66842666 - 67030381
187716
ENSAPLT00000022756
66842666 - 67029369
186704