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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67043886_67045189_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67043886 - 67045189
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AACTCTTCAAAT
Flanking Amino Acid:
KQIRVNVVAPGFVHTEMTAH
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
81.9
0.72
0.7
81.3
23.7
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
55.4
0.25
1.6
69.25
41.4

Associated Gene:

Gene:
CBR4
Ensembl Gene ID:
ENSAPLG00000006660
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006912
67043707 - 67047157
3451