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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67045325_67045941_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67045325 - 67045941
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
QQQGGAIVNIGSVVGLKGNS
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.2
0.72
0.7
81.3
29.1
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
CBR4
Ensembl Gene ID:
ENSAPLG00000006660
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006912
67043707 - 67047157
3451