About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67046079_67046359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67046079 - 67046359
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CAGTATATAATT
Flanking Amino Acid:
NYLVNAAAINRDGLLLRTKT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75
0.56
1
73.6
40.6
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
48
-0
1.8
62.65
41.8

Associated Gene:

Gene:
CBR4
Ensembl Gene ID:
ENSAPLG00000006660
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006912
67043707 - 67047157
3451