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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67073091_67075269_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67073091 - 67075269
Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAAAT
Flanking Amino Acid:
AVSKADKDSKKEKKGLLKLL
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.1
38.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
28.3
-2.5
2.8
33.2
41.9
Minor BPS
62.7
0.48
1.8
80.5
41.5

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904