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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67075629_67079254_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67075629 - 67079254
Intron Length:
3626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTGCATATTA
Flanking Amino Acid:
VNQARNAVRTVAAHNQERPT
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
83.4
0.75
0.8
76.9
37.3
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
46.7
-0.2
2.2
63.7
43.2

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904