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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67079824_67082198_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67079824 - 67082198
Intron Length:
2375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTAGATTTAACA
Flanking Amino Acid:
AHLRPQTRPSVYIAIYPYTP
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
77.9
0.63
0.8
72.9
32
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
63.8
0.43
1.6
73.03
38.8

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904