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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67082354_67090094_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67082354 - 67090094
Intron Length:
7741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTCAAAAAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCCCTCAAAA
Flanking Amino Acid:
SEVTYQAALGNMNPPLPPPP
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
53
0.07
1.1
49.5
41.7
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
67
0.53
1.6
79.17
36.3

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904