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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67091400_67100156_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67091400 - 67100156
Intron Length:
8757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATTATTAATG
Flanking Amino Acid:
IGIFPISYVEFNTAAKQLIE
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.8
0.81
0.7
81.8
29.7
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
59.1
0.15
1.6
62.43
39.3

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904