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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67100253_67101618_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67100253 - 67101618
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
CATGTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
GGAGACATAATC
Flanking Amino Acid:
ADKDCLPFAKDDVLTVIRRV
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
70.5
0.51
1
72
33.1
Major PPT
67.9
0.4
1
61.5
38.9
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
45
-0.4
1.8
51.12
39.1

Associated Gene:

Gene:
SH3RF1
Ensembl Gene ID:
ENSAPLG00000006243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006497
67065779 - 67147682
81904