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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67163004_67164502_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67163004 - 67164502
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
GTGATTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTCTTGTGATT
Flanking Amino Acid:
LVMADGAYQEDNDE*
Intron Amino Acid Position:
1294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.1
0.65
1
73
42
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
47.3
-0.1
2
68.02
37.4

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797