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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67167682_67168883_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67167682 - 67168883
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTTGTCACTT
Flanking Amino Acid:
AKEGPSDSEDNMSGEADTDL
Intron Amino Acid Position:
1134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.2
0.61
0.8
69.5
36.5
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
44.4
-0.3
2.4
66.82
44.9

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000030789
67162990 - 67201754
38765