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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67171738_67172686_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67171738 - 67172686
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTACCACATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCGTATTCAACT
Flanking Amino Acid:
KMQPQKEAPEETCSSDSLQP
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.3
74.1
38.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
64.1
0.32
1
61
39.9
Minor 5ss
28.9
-2.4
2.6
32.6
42
Minor BPS
56.3
0.28
1.8
72.86
44.2

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000030789
67162990 - 67201754
38765