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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67180668_67181177_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67180668 - 67181177
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CGTTCTTTACTT
Flanking Amino Acid:
GRKSRNKEEEEYLARLRQIR
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83
0.74
0.7
82.4
27.9
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
63
0.49
1.6
75.88
41.7

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765