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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67190433_67192358_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67190433 - 67192358
Intron Length:
1926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGCTATCTAATT
Flanking Amino Acid:
EKKMMTKFRQAFPTPVKKMN
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.9
0.52
0.9
66.1
39.4
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
50.4
0.09
1.8
70.17
41

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765