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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67194895_67196141_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67194895 - 67196141
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGACATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TATGCAGTAACT
Flanking Amino Acid:
LYEMCTLKHAFEAGNMKNLV
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
43.2
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
59.5
0.21
1
54
40.4
Minor 5ss
30.2
-2.3
2.6
34.3
41.4
Minor BPS
51.2
0.12
2.3
78.35
43.6

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765