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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67197356_67197470_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67197356 - 67197470
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCGTTCTTATTT
Flanking Amino Acid:
GDFGIARVLNSTVELARTCI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.3
0.73
0.7
82
29.2
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
62.7
0.48
1.6
74.68
43.1

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000037057
67162990 - 67201786
38797