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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67199695_67201465_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67199695 - 67201465
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAAAT
Flanking Amino Acid:
NIVLYRESFEENGCLYIVMD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
61.5
0.44
1.5
77.37
39.2

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765