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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67201563_67201637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67201563 - 67201637
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CTGTCCTCAAAA
Flanking Amino Acid:
YVIKEINISKMSNKEREESR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
71.6
0.54
1
72
33.1
Major PPT
77
0.61
1
78.4
27.5
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
60.8
0.33
1.7
68.96
43.2

Associated Gene:

Gene:
NEK1
Ensembl Gene ID:
ENSAPLG00000005269
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037057
67162990 - 67201786
38797
ENSAPLT00000030789
67162990 - 67201754
38765
ENSAPLT00000018768
67162990 - 67201754
38765
ENSAPLT00000041691
67162990 - 67201754
38765
ENSAPLT00000005529
67162990 - 67201754
38765