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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67218084_67242143_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67218084 - 67242143
Intron Length:
24060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTTATTAATT
Flanking Amino Acid:
DNLLDGDASIGTHYTMTNGG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.3
0.68
0.8
75.3
33.2
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
67.3
0.62
1.5
80.59
34.7

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005048
67217924 - 67262908
44985