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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67242302_67243804_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67242302 - 67243804
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACATGAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTATTCATAATG
Flanking Amino Acid:
KCKDRERHRRINSKKKESAW
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.1
56.7
42.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
29.9
-2.3
3.4
30.6
43.3
Minor BPS
55.7
0.04
1.7
60.51
41.7

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045709
67230136 - 67262840
32705
ENSAPLT00000005048
67217924 - 67262908
44985
ENSAPLT00000046839
67230136 - 67262908
32773