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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67246309_67247010_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67246309 - 67247010
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
WAELIIGQAEGPGSYIMNYI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046839
67230136 - 67262908
32773
ENSAPLT00000045709
67230136 - 67262840
32705
ENSAPLT00000005048
67217924 - 67262908
44985