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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67251859_67255934_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67251859 - 67255934
Intron Length:
4076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
GTTCCCTTCAGC
Flanking Amino Acid:
IMTVFTFGIKVPSGLFIPSM
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
75.6
0.58
0.9
69.9
36.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
54
0.11
2.1
68.72
42.7

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005048
67217924 - 67262908
44985
ENSAPLT00000046839
67230136 - 67262908
32773
ENSAPLT00000045709
67230136 - 67262840
32705