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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67256122_67257292_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67256122 - 67257292
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAAAA
Flanking Amino Acid:
YAMVGAAACLGGVTRMTVSL
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.7
81.4
29.8
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
61.4
0.35
1.4
68.66
37.7

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045709
67230136 - 67262840
32705
ENSAPLT00000005048
67217924 - 67262908
44985
ENSAPLT00000046839
67230136 - 67262908
32773