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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67257692_67258440_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67257692 - 67258440
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAA
U12 Branch Point Sequence:
TCTTTCTTAAAG
Flanking Amino Acid:
ALRRDLTIAIESARKKQEGI
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
87.2
27.3
Major BPS
45.3
-0.2
1.2
50
35.2
Major PPT
76.9
0.6
1
77.9
28.4
Minor 5ss
40.4
-1.1
2.8
54.5
42.7
Minor BPS
71.6
0.54
1.5
72.05
40.8

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045709
67230136 - 67262840
32705
ENSAPLT00000005048
67217924 - 67262908
44985
ENSAPLT00000046839
67230136 - 67262908
32773