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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67258658_67262749_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67258658 - 67262749
Intron Length:
4092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTGGATTAACA
Flanking Amino Acid:
GLRQCLVTHNGRLLGIITKK
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
50.7
0.02
2.2
68.02
44.4

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045709
67230136 - 67262840
32705