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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67261013_67262749_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67261013 - 67262749
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGATTAGA
5'SS Class:
major
3'SS Sequence:
TTGTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTGGATTAACA
Flanking Amino Acid:
EQLKQHVEPLAPPWHYNKKR
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.7
37.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
29.9
-2.3
2.6
31
37
Minor BPS
50.7
0.02
2.2
68.02
44.4

Associated Gene:

Gene:
CLCN3
Ensembl Gene ID:
ENSAPLG00000004867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046839
67230136 - 67262908
32773
ENSAPLT00000005048
67217924 - 67262908
44985