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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67268090_67268664_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67268090 - 67268664
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGATC
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTGCTTTTATT
Flanking Amino Acid:
VGYRELPETNANLKKICKAI
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72
37.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
36.3
-1.6
3.4
48.3
42.3
Minor BPS
58.6
0.35
1.7
74.98
42.6

Associated Gene:

Gene:
MFAP3L
Ensembl Gene ID:
ENSAPLG00000004242
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004881
67266796 - 67334994
68199