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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67269630_67270401_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67269630 - 67270401
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
GCTCTTTTAAGA
Flanking Amino Acid:
PVGDNVFAAVKLFLSKKLKE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
85.2
0.79
0.8
79.2
32.9
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
53.3
0.1
1.6
60.49
39.9

Associated Gene:

Gene:
MFAP3L
Ensembl Gene ID:
ENSAPLG00000004242
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004881
67266796 - 67334994
68199