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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67271193_67271784_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67271193 - 67271784
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
AGTAAAACAATT
Flanking Amino Acid:
CEELDPEKPSDALVSSVGLT
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
83
0.74
0.8
80.1
32
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
39
-0.7
2
56.32
39

Associated Gene:

Gene:
MFAP3L
Ensembl Gene ID:
ENSAPLG00000004242
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004881
67266796 - 67334994
68199